Illumina Single Cell 3' RNA Prep

Accessible and highly scalable single-cell RNA-Seq solution for mRNA capture, barcoding, and library prep without complex workflows or microfluidics

세포 포획부터 라이브러리 준비까지 약 15시간

Assay 시간

세포 포획에 10분

수작업 시간

100~200,000개의 세포

사용량

상세한 정보는 사양표를 확인하세요.

Overview

Illumina Single Cell 3' RNA Prep kits make single-cell RNA sequencing (scRNA-Seq) accessible for more labs with an easy, scalable, and microfluidics-free workflow. Researchers can undertake larger and more varied multiomics studies without the budget or technology constraints of other single-cell approaches.

Scalable and flexible solution

Illumina Single Cell 3' RNA Prep can easily scale with a wide processing range from hundreds to hundreds of thousands of cells. This increased cell throughput can reveal rare cell types. The assay is also flexible to run one sample or up to 96 samples in parallel with sample multiplexing.

High-quality performance

Illumina Single Cell 3' RNA Prep kits offer high transcript and gene sensitivity with the high-quality data you expect from Illumina. The gentle isolation technique helps detect fragile cells that are often missed by other methods. The assay is compatible with custom single-cell measurements for expanded multiomic applications.

Accessible workflow

Illumina Single Cell 3' RNA Prep kits do not require expensive microfluidic equipment or labor-intensive protocols. You can conduct single-cell studies on your benchtop using a simple manual workflow with flexible stopping points.

Simple and scalable workflow

3' RNA sample prep

Sample prep

Create templated emulsions using a vortex mixer to capture and barcode single-cell mRNA.

3' RNA library prep

Library prep

Generate cDNA and prepare single-cell libraries for sequencing.

3' RNA sequencing

Sequencing

Sequence on an NGS system to match the scale of your study.

3' RNA analysis

Analysis

Analyze and visualize single-cell data using DRAGEN and Illumina Connected Multiomics.

Specifications

Required products

Illumina Single Cell 3' RNA Prep includes both cell capture and library prep reagents. Choose the size kit to match the number of cells you want to assay. Kits are also available separately as Illumina Single Cell 3' RNA Capture and Illumina Single Cell Library Prep. 

 

For multiplexing more than 8 samples per run, use Illumina Single Cell Unique Dual Indexes. To input single nuclei, use the Illumina Single Cell Nuclei Isolation Kit. For enrichment of custom RNA tag sequences, use the Illumina Single Cell Supplemental Enrichment and Amplification Kit. 

 

New users should order the Illumina Single Cell Prep Starter Equipment for needed accessory equipment.

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Applications

Neuroscience

Neuronal tissues comprise a complex organization of diverse cell types that continuously reorganize and remodel throughout an organism’s lifetime. Illumina Single Cell 3' RNA Prep can help researchers catalog the true diversity of neuronal cell populations with transcriptional sensitivity, providing insight into:

  • Neurodevelopmental and neurodegenerative diseases
  • Previously unknown roles of specific neuronal populations
  • The effect of neuro-immune cells on disease and development

Cancer research

Cancer is a dynamic and diverse disease involving complex cell populations. Understanding the cell types and mutations that drive cancer requires sophisticated methods. The Illumina Single Cell 3' RNA Prep kits can help scientists:

  • Detail heterogeneity of the tumor microenvironment
  • Identify novel cancer biomarkers
  • Understand mechanisms of immunotherapy and drug resistance

Immunology

The immune system is composed of a complex hierarchy of diverse cell types that work in concert to identify, target, and eliminate pathogens. Illumina Single Cell 3' RNA Prep kits can help researchers:

  • Understand developmental and differentiation pathways in immune cell populations
  • Evaluate the roles and functions of immune cell populations
  • Study the immune response to pathogens

Example workflow

Project recommendations

기기 권장 샘플 수 리드 길이
NextSeq 2000 시스템

Samples per run:  
P1: 2 T2 samples
P2: 10 T2 samples or 2 T10 sample
P3: 30 T2 samples, 6 T10 samples, or 3 T20 samples
P4: 45 T2 samples, 9 T10 samples, or 4 T20 samples

100 cycle kits to run 45 bp × 72 bp

NovaSeq 6000 시스템

Samples per flow cell (single flowcell run):
SP: 20 T2 samples, 4 T10 samples, or 2 T20 samples
S1: 40 T2 samples, 8 T10 samples, or 4 T20 samples
S2: 102 T2 samples, 20 T10 samples, 10 T20 samples, or 2 T100 samples
S4: 250 T2 samples, 50 T10 samples, 25 T20 samples, or 5 T100 samples

100 cycle kits to run 45 bp × 72 bp

NovaSeq X Plus 시스템

Samples per flow cell (single flowcell run):
1.5B: 40 T2 samples, 8 T10 samples, or 4 T20 samples
10B: 250 T2 samples, 50 T10 samples, 25 T20 samples, or 5 T100 samples
25B: 650 T2 samples, 130 T10 samples, 65 T20 samples, or 13 T100 samples

100 cycle kits to run 45 bp × 72 bp

Related applications and methods

Documentation

제품 관련 자료

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Figures

Single-cell mRNA capture and barcoding with PIPseq chemistry

Single-cell mRNA capture and barcoding with PIPseq chemistry

Create templated emulsions using a vortex mixer to capture and barcode single-cell mRNA. Generate cDNA and prepare single-cell libraries for sequencing. Sequence on an NGS system to match the scale of your study. Analyze scRNA-Seq data using DRAGEN and Partek software.

High-resolution scRNA-Seq at a scale of thousands of cells

High-resolution scRNA-Seq at a scale of thousands of cells

Barcode rank plot (left) and barnyard scatter plot (right) showing effective separation of mixed culture of NIH3T3 (mouse) and HEK 293 (human) cell lines. 4106 cells captured using the Illumina Single Cell 3ʹ RNA Prep T2 kit with less than 5% multiplets.

High-resolution scRNA-Seq at a scale of thousands of cells

High-resolution scRNA-Seq at a scale of tens of thousands of cells

scRNA-Seq for cryopreserved human peripheral blood mononuclear cells (PBMCs). UMAP of 31,613 cells captured using the Illumina Single Cell 3ʹ RNA Prep T20 kit resolves diverse immune cell populations.

High-resolution scRNA-Seq at a scale of thousands of cells

High-resolution scRNA-Seq at a scale of hundreds of thousands of cells

scRNA-Seq for mouse brain nuclei from frozen tissue. UMAP analysis of 155,000 nuclei captured using the Illumina Single Cell 3ʹ RNA Prep T100 kit resolves diverse brain cell populations.

Resources

축소판

The Illumina 3' Single Cell RNA Prep Workflow

Discover how the Illumina 3' Single Cell RNA Prep workflow makes single-cell sequencing simple, affordable, and microfluidics-free. With proven performance across diverse cell types and reliable, high-quality data, it’s easier than ever to decode at single-cell resolution and power your next breakthrough.

완전한 프렙 워크플로우 제품 (4)

Illumina Single Cell 3' RNA Prep, T2 (8 samples, 2000 cells/sample)

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Illumina Single Cell 3' RNA Prep, T2 (8 samples), Illumina 단일세포 라이브러리 준비 키트와 단일세포 mRNA 캡처, 바코딩 및 cDNA 합성을 위한 시약이 포함되어 있으며, 샘플당 최대 2000개의 세포를 처리할 수 있습니다.

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Illumina Single Cell 3' RNA Prep, T10 (8 samples, 10,000 cells/sample)

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Illumina Single Cell 3' RNA Prep, T10 (8 samples), Illumina 단일세포 라이브러리 프렙 키트와 단일세포 mRNA 캡처, 바코딩 및 cDNA 합성을 위한 시약이 포함되어 있으며, 샘플당 최대 10,000개의 세포를 처리할 수 있습니다.

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Illumina Single Cell 3' RNA Prep, T20 (4 samples, 20,000 cells/sample)

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Illumina Single Cell 3' RNA Prep, T20 (4 samples), Illumina 단일세포 라이브러리 준비 키트와 단일세포 mRNA 캡처, 바코딩 및 cDNA 합성을 위한 시약이 포함되어 있으며, 샘플당 최대 20,000개의 세포를 처리할 수 있습니다.

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Illumina Single Cell 3' RNA Prep, T100 (2 samples, 100,000 cells/sample)

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Illumina Single Cell 3' RNA Prep, T100 (2 samples), Illumina 단일세포 라이브러리 프렙 키트와 단일세포 mRNA 캡처, 바코딩 및 cDNA 합성을 위한 시약이 포함되어 있으며, 샘플당 최대 100,000개의 세포를 처리할 수 있습니다.

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액세서리 제품 (4)

Illumina Single Cell Unique Dual Indexes (96 indexes, 96 samples)

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Illumina Single Cell Unique Dual Indexes(96 indexes, 96 samples), 라이브러리의 하이플렉스 풀링을 위한 Illumina Single Cell Library Prep과 함께 사용하기 위한 옵션 액세서리.

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Illumina Nuclei Isolation Kit (4 samples)

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Illumina Nuclei Isolation Kit(샘플 4개), 핵 분리, 세척 및 재현탁을 위한 선택적 시약, Illumina Single Cell 3' RNA Prep에 투입.

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Illumina Single Cell Supplemental Enrichment and Amplification Kit

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Illumina Single Cell Supplemental Enrichment and Amplification(SEA) 키트, 맞춤형 단일세포 응용 프로그램을 위한 Illumina Single Cell 3' RNA Capture 및 Illumina Single Cell Library Prep과 함께 사용할 수 있는 옵션 시약.

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Illumina Single Cell Prep Starter Equipment

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Illumina Single Cell Prep Starter Equipment, Illumina Single Cell Library Prep을 준비하려면 1회 구매가 필요합니다. 0.5ml, 1.5ml, 5ml 튜브용 가열 뚜껑 및 가열 블록이 있는 드라이 배스 장치와 Vortex 믹서 장치 및 부속품 튜브 홀더 어셈블리와 0.5ml, 1.5ml, 5ml 튜브용 튜브 스탠드가 포함되어 있습니다.

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선택 품목 요약

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FAQs

Illumina Single Cell 3' RNA Prep kits use PIPseq chemistry with particle-templated instant partitions (PIPs). PIPs can segregate complex cell mixtures into partitions with barcoded template particles that can be easily processed for single-cell applications such as single-cell RNA sequencing (scRNA-Seq).

Yes, our vortex mixer and dry bath are required for reliable results. The vortex mixer is engineered for consistent emulsification. The dry bath ensures precise temperature profiles; typical dry baths do not allow the quick temperature changes that are described in our lysis protocol.

Yes, using the Fluent DSP/Methanol Fixation demonstrated protocol for cells or nuclei. Paraformaldehyde (PFA) fixation is not compatible currently.

No, only 3' mRNA capture is available currently.

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NextSeq 1000/2000 Reagents

NextSeq 1000/2000 시스템용 시약은 사용하기 쉬운 카트리지와 유연한 시퀀싱 옵션을 위한 다중 플로우 셀 구성을 갖추었습니다.

NovaSeq X Series Reagent Kits

Reagent kits for the NovaSeq X Series include a reagent cartridge, buffer cartridge, flow cell, lyo insert, pre-load buffer, and library tube strip.

NovaSeq 6000 Reagent Kit

즉시 사용 가능한 사전 충전 시약 카트리지와 플로우 셀로 구성된 NovaSeq 6000 시스템용 시약 키트.

DRAGEN 2차 분석 주문

Illumina DRAGEN 2차 분석을 통해 유전체학 인사이트를 극대화하고, 최신 업데이트에 대해 알아보고, FAQ를 읽고, 제품 지원을 찾아보세요.

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