Illumina DNA Prep with Enrichment Dx

A library preparation and enrichment solution for IVD targeted sequencing applications.

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Overview

Illumina DNA Prep with Enrichment Dx enables clinical labs to add targeted sequencing enrichment panels to their diagnostic applications and is an approved IVD medical device in the United States, the European Union, the United Kingdom, and other international markets.

This FDA-registered and EU IVDR 2017/746–compliant library prep and enrichment kit enables clinical labs to add targeted sequencing enrichment panels to their diagnostic applications.

  • Essential component for building a targeted NGS IVD assay on Illumina Dx instruments

  • Flexible support for various sizes of fixed and custom panels, including exome panels

  • Compatibility with Illumina and third-party enrichment DNA probe panels 

  • Streamlined workflow enables smooth transition to assay development and implementation

Optimized performance

The kit is compatible with FDA-registered and CE-marked IVD NGS platforms that use proven sequencing by synthesis (SBS) chemistry to deliver highly accurate diagnostic testing. 

Integrated software

Local Run Manager in Dx mode offers onboard primary analysis with a user-friendly interface on the MiSeqDx or NextSeq 550Dx instruments. The DRAGEN for Illumina DNA Prep with Enrichment Dx App performs alignment and variant calling in DNA for somatic and germline mutations. This app automatically launches secondary analysis when paired with an On-Premise DRAGEN Server and the NextSeq 550Dx or NovaSeq 6000Dx instruments via Illumina Run Manager.  


Intended use

Intended use (CE-marked IVD) 

Illumina DNA Prep with Enrichment Dx Kit is a set of reagents and consumables used to prepare sample libraries from genomic DNA derived from human cells and tissue to develop in vitro diagnostic assays. User supplied probe panels are required for the preparation of libraries targeting specific genomic regions of interest. The generated sample libraries are intended for use on Illumina sequencing systems. The Illumina DNA Prep with Enrichment Dx includes software for sequencing run setup, monitoring, and analysis.

Intended use (FDA-registered) 

Illumina DNA Prep with Enrichment Dx is a set of reagents and consumables used to prepare sample libraries from genomic DNA derived from human cells and tissue. User-supplied probe panels are required for the preparation of libraries targeting specific genomic regions of interest. The generated sample libraries are intended for use on Illumina sequencing systems.


Specifications


Required products

To prepare targeted NGS libraries, Illumina DNA Prep with Enrichment Dx requires a user-supplied compatible enrichment panel and Local Run Manager. Speak with an Illumina sales representative to arrange installation on your Dx instrument. 

Instrument-specific reagent kits are also required: MiSeqDx Reagent Kit v3 (Catalog no. 20037124), NextSeq 550Dx High Output Reagent Kit v2.5 (300 cycles) (Catalog no. 20028871), or NovaSeq 6000Dx Reagent Kit v1.5 (300 Cycles) (Catalog no. 20046931 or 20046933).  

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Applications

Illumina DNA Prep with Enrichment Dx is an approved and registered IVD library prep and enrichment solution for in vitro diagnostic applications on the MiSeqDx, NextSeq 550Dx, and NovaSeq 6000Dx Instruments. 

Example workflow

1
Prep

Illumina DNA Prep with Enrichment Dx 

3
Analyze

DRAGEN for Illumina DNA Prep with Enrichment Dx App*

*Automatically launches when paired with an On-Premise DRAGEN Server and the NextSeq 550Dx or NovaSeq 6000Dx instruments via Illumina Run Manager. 


Application notes


Related applications and methods

Figures

Assay performance with whole-exome panelsa

a. Coriell Cell Line gDNA NA12878, with a known truth set for germline variant detection (Coriell platinum genome). Libraries were sequenced on the NextSeq 550Dx Instrument with FASTQ files generated from base calls using the GenerateFASTQ Dx Module in Local Run Manager; custom scripts in the DRAGEN platform v3.8.4 were used for analysis.

Illumina DNA Prep with Enrichment Dx with UD Indexes Set A (16 samples)

20051354

CE-marked and FDA-regulated IVD reagents , including index set A and size selection beads, for library preparation of genomic DNA isolated from 16 FFPE tissue samples. Purchase MiSeqDx, NextSeq 550Dx, or NovaSeq 6000Dx sequencing reagents separately.

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Illumina DNA Prep with Enrichment Dx with UD Indexes Set B (16 samples)

20051355

CE-marked and FDA-regulated IVD reagents , including index set B and size selection beads, for library preparation of genomic DNA isolated from 16 FFPE tissue samples. Purchase MiSeqDx, NextSeq 550Dx, or NovaSeq 6000Dx sequencing reagents separately.

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Illumina DNA Prep with Enrichment Dx with UD Indexes Set A (96 samples)

20051352

CE-marked and FDA-regulated IVD reagents , including index set A and size selection beads, for library preparation of genomic DNA isolated from 96 peripheral whole blood samples. Purchase MiSeqDx, NextSeq 550Dx, or NovaSeq 6000Dx sequencing reagents separately.

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Illumina DNA Prep with Enrichment Dx with UD Indexes Set B (96 samples)

20051353

CE-marked and FDA-regulated IVD reagents , including index set B and size selection beads, for library preparation of genomic DNA isolated from 96 peripheral whole blood samples. Purchase MiSeqDx, NextSeq 550Dx, or NovaSeq 6000Dx sequencing reagents separately.

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DNA Prep Enrichment Dx-Customer Site

20076400

1.5-day, hands-on instructions at customer site to familiarize users with Illumina DNA Prep with Enrichment Dx library prep workflow. Course provides hands-on sample and library prep, enrichment, quality control, best practices, troubleshooting, and related Illumina-supported sequencing and data analysis tools for a maximum of four trainees.

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TruSight Whole Genome Customer Training – Customer Site

20122846

A 1.5-day onsite training for the complete TruSight Whole Genome Dx Library Preparation workflow, with detailed hands-on instruction. Participants will learn all steps of the workflow including sample and library preparation, quality control, best practices, and troubleshooting. Training on Illumina-supported sequencing and data analysis tools specific to the TruSight Whole Genome workflow will be included.

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FAQs

Illumina DNA Prep with Enrichment Dx uses innovative on-bead tagmentation, which uses bead-bound transposomes to mediate a uniform reaction that integrates DNA extraction, fragmentation, library prep, and library normalization. This provides a rapid library prep and enrichment solution when combined with a simplified hybridization step. The kit includes clean-up beads for library purification and sequencing indexes. 

You will need to order the Dx reagents designated for your Illumina Dx sequencing Instrument: 

Not all reagent kits will be available in all countries. Please visit each product page to learn more. 

Illumina DNA Prep with Enrichment Dx supports a wide range of genomic DNA (gDNA) derived from cells and tissue. This includes gDNA extracted from whole blood or formalin-fixed, paraffin-embedded (FFPE) tissue. 

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Speak with a specialist

Have additional questions about Illumina DNA Prep with Enrichment Dx? Contact us today.