Informatics products

One platform, all your data, connected

From samples and systems to analysis, integrated data with a comprehensive bioinformatics software platform built by genomics experts

Data connectivity across your genomic ecosystem for comprehensive insights

Minimize hands-on time and seamlessly connect your scientific and clinical research data across your entire workflow. Our approachable and customizable bioinformatics software solutions are built for deep sequencer integration and efficient scaling in order to meet your data needs today and tomorrow.

Innovation and accuracy

Elevating data quality and reproducibility through industry-leading expertise, genomic AI, continual optimization, and population-level collaborations. Integrated DRAGEN bioinformatics, the most accurate secondary analysis for germline and somatic variant calling as measured by PrecisionFDA¹, delivers results you can trust.

Comprehensive

Integrated software suite supporting the genomics workflow from sample accessioning to insights discovery. Our software powers a breadth of applications and use cases for scientific and clinical research laboratories.

Future-ready

Flexible deployment options and continuous evolution of scientific, clinical, regulatory, and security needs. We have the infrastructure to meet your current needs and fast-track future growth.

Software product portfolio

From wet lab to data insights, the Illumina Connected Software product portfolio offers solutions for every workflow stage.

Lab

Clarity LIMS

Efficient sample tracking and workflow management for an optimized and efficient lab.

Run

BaseSpace Sequence Hub

Streamlined and intuitive cloud-based run set up and monitoring.

Local run management software

Convenient on-instrument run setup and monitoring.

Analytics

DRAGEN secondary analysis

The most accurate¹, comprehensive, and efficient secondary analysis for next-generation sequencing, with integrated leading-edge machine learning and artificial intelligence tools. Solutions for research and in vitro diagnostics (IVD).

DRAGEN Array

Accurate, comprehensive and efficient secondary analysis for Infinium microarray-based assays.

Illumina Connected Analytics

Operationalize bioinformatics workflows with sequencer integration, automatic analysis of customizable workflows, or out-of-the-box DRAGEN pipelines.

BaseSpace Apps

Push-button analysis with direct sequencer integration.

Insights

Emedgene

Emedgene software streamlines variant interpretation for rare disease genomics and other germline research applications with explainable AI and automation.

Connected Insights

Streamlined variant interpretation for somatic oncology research applications and beyond.

Correlation Engine

An interactive omics knowledgebase that puts private omics data in biological context with highly curated public data.

Data Analysis and Visualizations with Partek Flow

Partek Flow software is an easy-to-use bioinformatics platform enabling simplified analysis of next-generation sequencing and large-scale multiomics data in a visual user interface.

Focused workflows for key applications

We support workflows in the following areas for in-depth analysis of clinical and research data:

Oncology

Identify relevant DNA and RNA variants in tumor types and conduct in-house comprehensive genomic profiling of tumor samples.

Rare disease

Discover variants associated with rare disease through our AI-powered software. Offers support for genomes, exomes, panels, and virtual panels.

Reproductive health

Advance research in reproductive health with comprehensive NGS insights.

Infectious disease

Investigate infectious diseases with powerful, easy-to-use analysis software.

Discovery power

Genomic analysis solutions for any size experiment

Clinical research

For investigating a sample for a known genotype-phenotype association

Experiment level

Discover new genotype-phenotype associations with software customizable to accelerate new insights

Trial or population genetics

Highly accurate and efficient analysis customizable for large-scale genomics analysis and discovery

High standards of data privacy and protection

To meet the most stringent security requirements, our software products are built with the following security and compliance standards in mind. Data sharing security and governance, audit trails with encryption, and controlled sharing ensure your data is kept safe and secure. See individual informatics product pages to understand product-specific compliance and security certifications.

Security and compliance standards:

Support for Health Information Portability and Accountability Act (HIPAA) compliance² in a regulated environment
ISO 27001 certified³: Information Security Management System
ISO 27701 certified³: Privacy Information Management System
ISO 13485 compliant Quality Management System (QMS): Illumina maintains a QMS certified to comply with ISO 13485 standards
Supports privacy regulations by following GDPR principles
APEC PRP certified⁴: Privacy Recognition for Processors
TX-RAMP level 2 certification: Texas Risk and Authorization Management Program

Your trusted implementation and support partner

llumina software solutions are built with the same exceptional level of accuracy, accessibility, and security standards as our sequencing solutions. Our comprehensive bioinformatics suite maximizes efficiency and empowers you to transform your data into insights with powerful tools for configuration, seamless instrument integration, and approachable user experiences. To help you get up to speed faster, we offer best-in-class implementation support accelerating your utilization of genomics data.

Software resources portal

Visit our software resources site to access informatics news, videos, and direct links to key documentation.

View resources

Support and documentation

Get documentation, FAQs, technical bulletins, training, developer tools, and software downloads—all in one place.

Access support

Software training videos

See how to perform common functions with your software.

View training videos

Customer stories and related content

Can genomics stop the world’s leading cause of death?

Prof. Dr. Andreas Ziegler, scientific director and CEO of Cardio-CARE, uses genomics to study cardiovascular disease and population health data with a clinical focus.

Using whole-genome sequencing to study early-onset Parkinson’s disease

NysnoBio uses Illumina Connected Analytics and Cohorts to analyze NGS data and enable development of a gene therapy to slow Parkinson's Disease progression in individuals under age 50.

Streamlined workflow management enables sequencing at scale

Implementation of Clarity LIMS Software enables Rapid Novor to future-proof their growing laboratory operations.

Scaling to the cloud to support sequencing

DRAGEN platform on Microsoft Azure provides ultra-rapid secondary analysis capabilities in the cloud, enabling adoption of high-throughput whole-genome sequencing.

Using analytics to improve cancer diagnosis and therapy selection

Developing and automating best-practice workflows that make analyzing, processing, and disseminating genomic data more accessible.

Unveiling Illumina Connected Annotations: A breakthrough in genomic annotation

To make sense of the millions of genetic variants present in every person, these variants must be annotated with information like gene models, population frequencies, impact predictions, and reference databases.

Speak with a specialist

References

As compared against all participating solutions F1 score, DRAGEN v4.2 F1 score is 99.84% using PrecisionFDA v2 Truth Challenge Benchmark Data; Illumina Internal Data on file for DRAGEN v4.2, Non-Illumina data from Precision FDA v2 Truth Challenge 2020.
HIPAA is only only applicable in the US.
Schellman ISO Certificate Directory.
Schellman APEC Certificate Directory.

For every lab, everywhere

Illumina Single Cell 3' RNA Prep

NGS Workflow Finder

DRAGEN v4.3 now available on-premises and on-cloud

Illumina Proactive Instrument Performance Service

Do more, faster than ever

Next-generation sequencing for beginners

Next-generation sequencing for beginners

Next-generation sequencing for beginners

Next-generation sequencing for beginners

Next-generation sequencing for beginners

Next-generation sequencing for beginners

Next-generation sequencing for beginners

This is the Genome Era

This is the Genome Era

This is the Genome Era

This is the Genome Era

This is the Genome Era

This is the Genome Era

This is the Genome Era

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

For every lab, everywhere

Informatics products

Data connectivity across your genomic ecosystem for comprehensive insights

Innovation and accuracy

Comprehensive

Future-ready

Software product portfolio

Lab

Run

Analytics

Insights

Microarray software tools to ensure optimal time-to-answer

Focused workflows for key applications

Oncology

Rare disease

Reproductive health

Infectious disease

Discovery power