BaseSpace Sequence Hub

Simplify your bioinformatics with an economical and powerful computing environment to manage, analyze, and share data.Read More...

BaseSpace Sequence Hub Enterprise Annual Subscription


Frequently Purchased Together

As a key component of the BaseSpace Suite, BaseSpace Sequence Hub is a direct extension of your Illumina instruments. Data flows directly from the instrument into BaseSpace Sequence Hub, which enables you to manage and analyze data using a curated set of analysis apps. BaseSpace Sequence Hub:

  • Enables you to set up and monitor instrument runs in real-time
  • Promotes efficiency by converting sequencing data to a standard format and directly streaming them to the cloud
  • Provides a more economical solution than assembling infrastructures and tools in-house
  • Increases productivity with easy access and execution of a multitude of genomic analysis apps (provided by you, Illumina, or third-parties). As a result, specialized staff members, such as bioinformaticians are free to work on more complicated analyses
  • Fosters collaboration and innovation with simplified data sharing
  • Provides multiple layers of security and supports Health Insurance Portability and Accountability Act (HIPAA) compliance using robust Amazon Web Services cloud infrastructure
  • Scales to accommodate the need for more storage and computing with a tiered pricing structure

See All BaseSpace Data Analysis Apps

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Schellman ISO 27001 Logo

Illumina has received ISO 27001 certification of its information security management system (ISMS) supporting BaseSpace Sequence Hub and BaseSpace Variant Interpreter, hosted in Amazon Web Services (AWS), in both the US and EMEA. The certification was performed by Schellman, an ANAB and UKAS accredited Certification Body based in the US.

BaseSpace Sequence Hub Registration

Register now for a BaseSpace Sequence Hub Basic Account, which includes 1 TB of Storage.

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Integrated Run Setup and Monitoring

Integration with all Illumina instruments means that users can set up runs and monitor them from anywhere.

Streamlined Data Management and Storage

Scale up or down depending upon your storage needs—all without burdening your IT department with hardware maintenance.

Simplified Data Analysis

Easily perform routine data analysis with a comprehensive library of apps available.





Included Storage 1 TB 1 TB 1 TB
Compute 30-Day Free Trial with 250 complimentary iCredits 250 complimentary iCredits* 250 complimentary iCredits*
Payment Plans n/a Monthly Billing
Unlimited Storage + Compute*
Monthly Billing
Unlimited Storage + Compute*
Run Setup
Run Monitoring
Data Sharing
Apps Free Apps only
(after trial period expires)
All All
API Access
Command-Line Access
Comprehensive Security Framework
Number of Users One Unlimited Unlimited
Workgroups   One Unlimited
Bioinformatics Professional Services   8 hours ** 24 hours **
Multiple Workgroups    
Private Domain    
Single Sign-On    
Supports customers in a HIPAA-regulated environment ***    
Access Control    
Audit Trail    
Price Free Contact a Sales Rep Contact a Sales Rep

* For new customers only. Unlimited plans are only available for the first year. Subsequent years are Monthly Billing.

** With the purchase of Unlimited Storage and Compute.

*** Applicable in the US only.



通过BaseSpace Sequence Hub SRA Submission App,可在从文库制备到数据分析的整个过程跟踪样本,帮助BRC-Seq为其客户提供高质量测序数据和其他价值。


See the Product



Sequencing Sheet Format Specifications

Technical Note | PDF < 1 MB

BaseSpace Apps Quick Guide

Product Information Sheet | PDF < 1 MB

Benefits of whole-genome sequencing

Brochure | PDF < 1 MB

BaseSpace Sequence Hub

Data Sheet | PDF 3 MB


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BaseSpace Variant Interpreter

BaseSpace Variant Interpreter enables genetic labs to rapidly identify biologically significant variants from human genomic data.

BaseSpace Cohort Analyzer

BaseSpace Cohort Analyzer allows you to integrate and analyze subject and genomic data together using innovative visualization and analysis tools.

BaseSpace Correlation Engine

BaseSpace Correlation Engine mines over 20,000 genomic studies to get data-driven answers for genes, experiments, drugs and phenotypes for your research.