Powerful analytical tools to inform discovery and development

Bioinformatics applications for diverse markets, including pharma, biotech, cancer research, and microbiology

Specialized Bioinformatics Applications

Microarray and next-generation sequencing (NGS) technologies are proving useful to increasingly diverse industries, requiring specialized bioinformatics applications for data analysis and interpretation.

Our bioinformatics tools include the BaseSpace platform, on which partners can build and deploy industry-specific analysis and visualization tools, and the DRAGEN Bio-IT Platform, which provides ultra-rapid secondary analysis of next-generation sequencing (NGS) data. Through these practices, we support a broad and growing range of bioinformatics applications.

Specialized Uses of Bioinformatics

Drug discovery and development programs are enhanced with specialized bioinformatics analyses. BaseSpace Cohort Analyzer and BaseSpace Correlation Engine support translational research programs by providing access to curated genomic data, allowing correlation of private experimental results and testing of new hypotheses. BaseSpace Cohort Analyzer maximizes clinical trial value by enabling researchers to assess the impact of therapies or drug effects in large subject populations.

BaseSpace Sequence Hub offers an economical and powerful computing environment to manage, analyze, and share sequencing data for a broad range of bioinformatics applications, including drug discovery and development research.

Genomic Data Mining and Interpretation

See examples of distinguished universities and pharmaceutical companies that have cited BaseSpace Correlation Engine in peer-reviewed publications.

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SARS-CoV-2 NGS Data Toolkit

Illumina is making it simpler for researchers to detect and identify SARS-CoV-2 and contribute their findings to the community with an integrated software toolkit, free of charge.

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SARS-CoV-2 NGS Data Toolkit

Cancer researchers need simple-to-use bioinformatics applications to gain insights from complex genomic data. 

BaseSpace Cohort Analyzer allows researchers to make important discoveries without specialized bioinformatics skills. The retrospective analysis of clinical trial data can help inform future cancer research and drug development programs. 

BaseSpace Correlation Engine can mine genomic studies to get data-driven answers about cancer-related genes, experiments, drugs, and phenotypes.

The DRAGEN Bio-IT Platform, available on-premise or in the cloud via BaseSpace Sequence Hub, analyzes sequencing data from a variety of experiment types, including whole genomes, exomes, cancer germline and somatic datasets, and RNA sequencing.

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Immuno-oncology Bioinformatics Tools

Improved informatics tools enable neoantigen discovery and tumor microenvironment analysis.

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Single-cell sequencing applications offer key insights into the functioning of individual cells, allowing a new level of resolution for biological researchers. Single-cell methods examine the genomes or transcriptomes of individual cells, enabling researchers to determine cell-specific contributions within complex tissues.

We provide a comprehensive bioinformatics solution for single-cell whole transcriptome analysis applications, including both BaseSpace Sequence Hub and partner analysis apps. BaseSpace Sequence Hub is used upon completion of sequencing to demultiplex base call files (BCL) to per-sample FASTQ files and perform secondary analysis with the BaseSpace SureCell RNA Single-Cell App.

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Explore All BaseSpace Sequence Hub Apps
Single-Cell RNA Sequencing

Study cellular differences often masked by bulk sampling. Explore high- and low-throughput single-cell analysis methods.

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Bringing Bioinformatics In-House Cuts Costs and Time

Phosphorus uses the DRAGEN Bio-IT Platform to perform genomic data analysis onsite. See how this platform enabled the company to decrease turnaround time and reduce data analysis costs by about 25-30% on a per-sample basis.

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Bringing Bioinformatics Pipeline In-House Reduces Costs and Time

Other Specialized Bioinformatics Applications

The varied applications of Illumina bioinformatics software also include microarray data analysis, microbiology, agrigenomics, and more.

Microarray Data Analysis
Microarray Data Analysis

Access bioinformatics tools for genotyping and methylation microarray experimental design, sample tracking, and data analysis applications. These solutions reduce time to answer, so you can spend more time doing research.

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Microbial Genomics
Microbes

Gain critical genetic insights into bacteria, viruses, and other pathogens with a broad range of sequencing tools and bioinformatics applications.

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De Novo Assembly
De Novo Assembly

Sequence organisms without a reference genome, such as novel microbes, animals, or plants. Choose from a variety of intuitive bioinformatics tools for sequence assembly.

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HLA Sequencing
HLA Sequencing

HLA typing with NGS generates unambiguous, phase-resolved results using a single assay, system, and analysis program.

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Polyploid Organism Array Data Analysis
Polyploid Organism Array Data Analysis

Perform genotyping data analysis of polyploid organisms such as wheat and potato using the Polyploid Genotyping Module in GenomeStudio.

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Tumor-Normal Sequencing
Tumor-Normal Sequencing

Comparing tumor and matched normal data from whole-genome sequencing experiments provides insight into cancer mechanisms.

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Genomics in Drug Development
Genomics in Drug Development

Illumina brings innovation to drug development by offering comprehensive genomic analysis solutions and collaborating with leading pharmaceutical providers.

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