MiSeq Control Software for simple run setup and monitoring

MiSeq Control Software

Overview of MiSeq Control Software

MiSeq Control Software is pre-installed on the MiSeq sequencing system. This software guides you through the steps to load the flow cell and reagents, and provides an overview of quality statistics that you can monitor as the run progresses.

During the run, Miseq Control Software performs the following tasks:

  • Operates the flow cell stage
  • Dispenses reagents
  • Controls flow cell temperatures
  • Captures images of clusters on the flow cell

The software performs runs according to parameters specified in the sample sheet.

miseq system

Download MiSeq Control Software or Get Support

See changes introduced in the latest versions of MiSeq Control Software, and download the newest version. Or access MiSeq technical support information.

Download MiSeq Control Software
View MiSeq Support Information
Common MiSeq Questions

Access a variety of frequently asked questions (FAQs) about MiSeq data analysis, reagents, and more.

View MiSeq FAQs